User-Level Workflow Design : A Bioinformatics Perspective, PDF eBook

User-Level Workflow Design : A Bioinformatics Perspective PDF

Part of the Lecture Notes in Computer Science series

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The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public.

In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise.

This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development.

Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology.

The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

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